How Developers Guide AI Coders

Author: Denis Avetisyan


A new analysis reveals the key elements developers emphasize when configuring AI coding agents like Claude Code to achieve desired software development outcomes.

Empirical study of Claude Code configuration files demonstrates prioritization of architectural guidance, development best practices, and project context.

While agentic AI coding assistants promise substantial gains in software development productivity, realizing this potential hinges on effectively configuring their behavior—a surprisingly opaque process. This paper, ‘Decoding the Configuration of AI Coding Agents: Insights from Claude Code Projects’, presents an empirical analysis of 328 configuration files from public Claude Code projects to illuminate the practices developers employ when guiding these agents. Our findings reveal a strong emphasis on specifying software architecture, alongside development guidelines and project overviews, suggesting these are considered crucial for agent success. How can a deeper understanding of these configurations inform best practices and unlock even greater capabilities in AI-driven software engineering?


The Promise of Intelligent Assistance

Software Engineering 3.0 is emerging with Agentic Code Assistants, systems designed to augment developer productivity. These assistants respond to natural language directives, generating code based on specified instructions. Their effectiveness, however, hinges on precise configuration. Unlike fully autonomous systems, they require detailed configuration files defining project scope, coding style, and dependencies. A well-defined configuration is paramount; even the most intelligent agent struggles without clear constraints. True intelligence isn’t what a system can do, but what it understands it shouldn’t.

Decoding Project Intent

Configuration files are repositories of information defining software architecture, development guidelines, and project specifics. They encode project standards for AI coding agents, ensuring consistent practices. The FP-Max algorithm robustly analyzes these files, identifying frequent itemsets and patterns that define project standards. Analysis of 328 Claude Code configuration files reveals that architectural concerns are specified in 72.6% of them, followed by Development Guidelines (44.8%), Project Overview (39%), Testing Guidelines (35.4%), and Commands (33.2%). This breadth of information underscores the importance of clear standards for AI-assisted development.

Automated Resolution Through Configuration

The Agentless Approach offers a structured workflow for resolving software issues by directly utilizing information within Configuration Files. Agentic Code Assistants implement solutions adhering to pre-defined rules established in the configuration. Tools like Claude Code streamline this process with a command-line interface designed to leverage configured agents, automating tasks like code modification, testing, and deployment. Analysis of a large codebase reveals that the most common configuration pattern (21.6% of files) consistently encompasses Architecture, Dependencies, and Project Overview, suggesting a standardized initial setup and problem definition.

Benchmarking the Next Generation

Rigorous benchmarking is essential to demonstrate the effectiveness of Agentic Code Assistants and the Agentless Approach, moving beyond isolated tests to encompass real-world software engineering tasks. A standardized, reproducible framework is needed to accurately assess capabilities and facilitate comparisons. SWE-bench provides such a framework, consisting of challenging programming problems reflecting modern software development demands. By measuring performance against established benchmarks, developers can quantify the improvements gained from well-configured agents. Validating agentic performance with SWE-bench establishes confidence in their ability to deliver real-world benefits. Efficiency, stripped bare of all but functional necessity, reveals true progress.

The study of Claude Code’s configuration reveals a pragmatic emphasis on establishing foundational constraints. Developers aren’t simply instructing the agent what to do, but rather defining the rules within which it operates, prioritizing architectural blueprints and high-level directives. This approach echoes a sentiment expressed by Edsger W. Dijkstra: “It’s not enough to just get it right; you have to understand why it’s right.” The configurations aren’t merely about achieving a functional output; they represent a deliberate effort to instill a guiding philosophy—a structured framework—into the agent’s reasoning process. This focus on foundational principles—establishing a clear, understandable basis for operation—aligns with the core concept of prioritizing software architecture as a primary configuration element.

The Road Ahead

The observed emphasis on architectural directives within agent configuration files suggests a fundamental constraint: current approaches necessitate explicit instruction regarding how to build, rather than simply what to build. A truly intelligent system would, ideally, infer suitable architecture from the problem statement itself. The continued reliance on detailed guidance is not a feature, but a confession – a tacit acknowledgement that the core problem remains unsolved. A system that needs instructions has already failed, in a sense.

Future work should not focus on adding more configurable parameters, but on reducing the need for configuration altogether. The pursuit of increasingly complex control mechanisms is a distraction. The relevant metric isn’t the number of options available, but the number of options required. Investigation into methods for implicit knowledge transfer – allowing agents to learn architectural principles from examples, or to reason analogically – offers a more promising path.

Ultimately, the field must confront the uncomfortable truth that specifying ‘good’ software engineering practices is itself an act of imposition. The ideal agent wouldn’t merely follow guidelines; it would generate them, based on first principles. Clarity is courtesy, and a truly intelligent system would offer explanations, not simply executable code.


Original article: https://arxiv.org/pdf/2511.09268.pdf

Contact the author: https://www.linkedin.com/in/avetisyan/

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2025-11-13 13:23